GaudiTesting.utils Namespace Reference

Classes
class	CodeWrapper

Functions
	platform_matches (List[str] unsupported_platforms)
	str_representer (dumper, data)
	kill_tree (ppid, sig)
	which (executable)
	get_platform ()
	expand_reference_file_name (reference)
Dict[str, Any]	filter_dict (Dict[str, Any] d, re.Pattern ignore_re)
str	compare_dicts (Dict[str, Any] d1, Dict[str, Any] d2, str ignore_re=None)
	_parse_ttree_summary (lines, pos)
	_parse_histos_summary (lines, pos)
	find_histos_summaries (stdout)
	find_ttree_summaries (stdout)
	file_path_for_class (cls)
str	_format_path (List[str] path)
bool	_floats_close (float a, float b, float rtol, float atol)
None	_compare (Any obj1, Any obj2, List[str] path, float rtol, float atol, int max_differences, List[str] differences)
None	assert_objects_equal (Any obj1, Any obj2, float rtol=1e-9, float atol=0.0, int max_differences=10)

Variables
	h_count_re

Function Documentation

_compare()

None GaudiTesting.utils._compare ( Any obj1, Any obj2, List[str] path, float rtol, float atol, int max_differences, List[str] differences )

protected

Recursively compare two objects and append difference descriptions to the list.

Handles dicts, lists, floats (with tolerance), and other types (exact equality).
Stops early if max_differences is reached.

Definition at line 419 of file utils.py.

) -> None:
    """
    Recursively compare two objects and append difference descriptions to the list.
 
    Handles dicts, lists, floats (with tolerance), and other types (exact equality).
    Stops early if max_differences is reached.
    """
    if len(differences) >= max_differences:
        return
 
    if type(obj1) is not type(obj2):
        differences.append(
            f"Type mismatch at {_format_path(path)}: {type(obj1).__name__} vs {type(obj2).__name__}"
        )
    elif isinstance(obj1, dict):
        keys1, keys2 = set(obj1.keys()), set(obj2.keys())
        for key in keys1 - keys2:
            if len(differences) >= max_differences:
                return
            differences.append(
                f"Extra key in first object at {_format_path(path)}: {key!r}"
            )
        for key in keys2 - keys1:
            if len(differences) >= max_differences:
                return
            differences.append(
                f"Extra key in second object at {_format_path(path)}: {key!r}"
            )
        for key in keys1 & keys2:
            if len(differences) >= max_differences:
                return
            _compare(
                obj1[key],
                obj2[key],
                path + [key],
                rtol,
                atol,
                max_differences,
                differences,
            )
    elif isinstance(obj1, list):
        if len(obj1) != len(obj2):
            differences.append(
                f"List length mismatch at {_format_path(path)}: {len(obj1)} vs {len(obj2)}"
            )
        else:
            for i, (item1, item2) in enumerate(zip(obj1, obj2)):
                if len(differences) >= max_differences:
                    return
                _compare(
                    item1, item2, path + [i], rtol, atol, max_differences, differences
                )
    elif isinstance(obj1, float):
        if not _floats_close(obj1, obj2, rtol, atol):
            differences.append(
                f"Float mismatch at {_format_path(path)}: {obj1} vs {obj2} "
                f"(diff={abs(obj1 - obj2)}, rtol={rtol}, atol={atol})"
            )
    elif obj1 != obj2:
        differences.append(
            f"Value mismatch at {_format_path(path)}: {obj1!r} vs {obj2!r}"
        )
 
 

_floats_close()

bool GaudiTesting.utils._floats_close ( float a, float b, float rtol, float atol )

protected

Check if two floats are close within relative and absolute tolerance.

Definition at line 407 of file utils.py.

def _floats_close(a: float, b: float, rtol: float, atol: float) -> bool:
    """Check if two floats are close within relative and absolute tolerance."""
    # Handle exact equality first (includes inf == inf case)
    if a == b:
        return True
    # Handle cases where difference is infinite (e.g., inf vs -inf)
    diff = abs(a - b)
    if diff == float("inf"):
        return False
    return diff <= atol + rtol * max(abs(a), abs(b))
 
 

_format_path()

str GaudiTesting.utils._format_path ( List[str] path )

protected

Format a path list as a bracket-notation string for error messages.

Definition at line 400 of file utils.py.

def _format_path(path: List[str]) -> str:
    """Format a path list as a bracket-notation string for error messages."""
    if not path:
        return "root"
    return "".join(f"[{p!r}]" for p in path)
 
 

_parse_histos_summary()

GaudiTesting.utils._parse_histos_summary ( lines, pos )

protected

Extract the histograms infos from the lines starting at pos.
Returns the position of the first line after the summary block.

Definition at line 283 of file utils.py.

def _parse_histos_summary(lines, pos):
    """
    Extract the histograms infos from the lines starting at pos.
    Returns the position of the first line after the summary block.
    """
    global h_count_re
    h_table_head = re.compile(
        r'(?:SUCCESS|INFO)\s+(1D|2D|3D|1D profile|2D profile) histograms in directory\s+"(\w*)"'
    )
    h_short_summ = re.compile(r"ID=([^\"]+)\s+\"([^\"]*)\"\s+(.*)")
 
    nlines = len(lines)
 
    # decode header
    m = h_count_re.search(lines[pos])
    name = m.group(1).strip()
    total = int(m.group(2))
    header = {}
    for k, v in [x.split("=") for x in m.group(3).split()]:
        header[k] = int(v)
    pos += 1
    header["Total"] = total
 
    summ = {}
    while pos < nlines:
        m = h_table_head.search(lines[pos])
        if m:
            t, d = m.groups(1)  # type and directory
            t = t.replace(" profile", "Prof")
            pos += 1
            if pos < nlines:
                l = lines[pos]
            else:
                l = ""
            cont = {}
            if l.startswith(" | ID"):
                # table format
                titles = [x.strip() for x in l.split("|")][1:-1]
                pos += 1
                while pos < nlines and lines[pos].startswith(" |"):
                    l = lines[pos]
                    values = [x.strip() for x in l.split("|")][1:]
                    hcont = {}
                    for i in range(len(titles)):
                        hcont[titles[i]] = values[i]
                    cont[hcont["ID"]] = hcont
                    pos += 1
            elif l.startswith(" ID="):
                while pos < nlines and lines[pos].startswith(" ID="):
                    values = [
                        x.strip() for x in h_short_summ.search(lines[pos]).groups()
                    ]
                    cont[values[0]] = values
                    pos += 1
            else:  # not interpreted
                raise RuntimeError("Cannot understand line %d: '%s'" % (pos, l))
            if d not in summ:
                summ[d] = {}
            summ[d][t] = cont
            summ[d]["header"] = header
        else:
            break
    if not summ:
        # If the full table is not present, we use only the header
        summ[name] = {"header": header}
    return summ, pos
 
 

_parse_ttree_summary()

GaudiTesting.utils._parse_ttree_summary ( lines, pos )

protected

Parse the TTree summary table in lines, starting from pos.
Returns a tuple with the dictionary with the digested informations and the
position of the first line after the summary.

Definition at line 202 of file utils.py.

def _parse_ttree_summary(lines, pos):
    """
    Parse the TTree summary table in lines, starting from pos.
    Returns a tuple with the dictionary with the digested informations and the
    position of the first line after the summary.
    """
    result = {}
    i = pos + 1  # first line is a sequence of '*'
    count = len(lines)
 
    def splitcols(l):
        return [f.strip() for f in l.strip("*\n").split(":", 2)]
 
    def parseblock(ll):
        r = {}
        delta_i = 0
        cols = splitcols(ll[0])
 
        if len(ll) == 3:
            # default one line name/title
            r["Name"], r["Title"] = cols[1:]
        elif len(ll) == 4:
            # in case title is moved to next line due to too long name
            delta_i = 1
            r["Name"] = cols[1]
            r["Title"] = ll[1].strip("*\n").split("|")[1].strip()
        else:
            assert False
 
        cols = splitcols(ll[1 + delta_i])
        r["Entries"] = int(cols[1])
 
        sizes = cols[2].split()
        r["Total size"] = int(sizes[2])
        if sizes[-1] == "memory":
            r["File size"] = 0
        else:
            r["File size"] = int(sizes[-1])
 
        cols = splitcols(ll[2 + delta_i])
        sizes = cols[2].split()
        if cols[0] == "Baskets":
            r["Baskets"] = int(cols[1])
            r["Basket size"] = int(sizes[2])
        r["Compression"] = float(sizes[-1])
 
        return r
 
    def nextblock(lines, i):
        delta_i = 1
        dots = re.compile(r"^\.+$")
        stars = re.compile(r"^\*+$")
        count = len(lines)
        while (
            i + delta_i < count
            and not dots.match(lines[i + delta_i][1:-1])
            and not stars.match(lines[i + delta_i])
        ):
            delta_i += 1
        return i + delta_i
 
    if i < (count - 3) and lines[i].startswith("*Tree"):
        i_nextblock = nextblock(lines, i)
        result = parseblock(lines[i:i_nextblock])
        result["Branches"] = {}
        i = i_nextblock + 1
        while i < (count - 3) and lines[i].startswith("*Br"):
            if i < (count - 2) and lines[i].startswith("*Branch "):
                # skip branch header
                i += 3
                continue
            i_nextblock = nextblock(lines, i)
            if i_nextblock >= count:
                break
            branch = parseblock(lines[i:i_nextblock])
            result["Branches"][branch["Name"]] = branch
            i = i_nextblock + 1
 
    return (result, i)
 
 

assert_objects_equal()

None GaudiTesting.utils.assert_objects_equal	(	Any	obj1,
		Any	obj2,
		float	rtol = 1e-9,
		float	atol = 0.0,
		int	max_differences = 10 )

Assert that two JSON-like objects are equal, with tolerance for floating-point values.

Args:
    obj1: First object to compare (can be dict, list, or primitive types)
    obj2: Second object to compare
    rtol: Relative tolerance for float comparisons (default: 1e-9)
    atol: Absolute tolerance for float comparisons (default: 0.0)
    max_differences: Maximum number of differences to report before stopping (default: 10)

Raises:
    AssertionError: If the objects are not equal, with a detailed message
                   showing differences found (up to max_differences).

Example:
    >>> assert_objects_equal({"a": 1.0}, {"a": 1.0})  # passes
    >>> assert_objects_equal({"a": 1.0}, {"a": 1.001}, atol=0.01)  # passes
    >>> assert_objects_equal({"a": 1}, {"a": 2})  # raises AssertionError

Definition at line 491 of file utils.py.

) -> None:
    """
    Assert that two JSON-like objects are equal, with tolerance for floating-point values.
 
    Args:
        obj1: First object to compare (can be dict, list, or primitive types)
        obj2: Second object to compare
        rtol: Relative tolerance for float comparisons (default: 1e-9)
        atol: Absolute tolerance for float comparisons (default: 0.0)
        max_differences: Maximum number of differences to report before stopping (default: 10)
 
    Raises:
        AssertionError: If the objects are not equal, with a detailed message
                       showing differences found (up to max_differences).
 
    Example:
        >>> assert_objects_equal({"a": 1.0}, {"a": 1.0})  # passes
        >>> assert_objects_equal({"a": 1.0}, {"a": 1.001}, atol=0.01)  # passes
        >>> assert_objects_equal({"a": 1}, {"a": 2})  # raises AssertionError
    """
    # pytest will hide this frame from the reported traceback
    __tracebackhide__ = True
 
    differences: List[str] = []
    _compare(obj1, obj2, [], rtol, atol, max_differences, differences)
    if differences:
        truncated = len(differences) >= max_differences
        msg = f"Objects differ ({len(differences)} difference(s) found"
        if truncated:
            msg += ", output truncated"
        msg += "):\n"
        msg += "\n".join(f"  - {d}" for d in differences)
        assert False, msg

compare_dicts()

str GaudiTesting.utils.compare_dicts	(	Dict[str, Any]	d1,
		Dict[str, Any]	d2,
		str	ignore_re = None )

Compare two dictionaries and return the diff as a string, ignoring keys that match the regex.

Definition at line 180 of file utils.py.

def compare_dicts(d1: Dict[str, Any], d2: Dict[str, Any], ignore_re: str = None) -> str:
    """
    Compare two dictionaries and return the diff as a string, ignoring keys that match the regex.
    """
    ignore_re = re.compile(ignore_re)
    filtered_d1 = filter_dict(d1, ignore_re)
    filtered_d2 = filter_dict(d2, ignore_re)
 
    return "\n" + "\n".join(
        difflib.unified_diff(
            pprint.pformat(filtered_d1).splitlines(),
            pprint.pformat(filtered_d2).splitlines(),
        )
    )
 
 
# signature of the print-out of the histograms

expand_reference_file_name()

GaudiTesting.utils.expand_reference_file_name

(

reference

)

Definition at line 114 of file utils.py.

def expand_reference_file_name(reference):
    # if no file is passed, do nothing
    if not reference:
        return reference
 
    # function to split an extension in constituents parts
    def platform_split(p):
        return set(re.split(r"[-+]", p)) if p else set()
 
    # get all the files whose name start with the reference filename
    dirname, basename = os.path.split(reference)
    if not dirname:
        dirname = "."
 
    for suffix in (".yaml", ".yml"):
        if basename.endswith(suffix):
            prefix = f"{basename[:-(len(suffix))]}."
            break
    else:
        # no special suffix matched, fallback on no suffix
        prefix = f"{basename}."
        suffix = ""
 
    flags_slice = slice(len(prefix), -len(suffix) if suffix else None)
 
    def get_flags(name):
        """
        Extract the platform flags from a filename, return None if name does not match prefix and suffix
        """
        if name.startswith(prefix) and name.endswith(suffix):
            return platform_split(name[flags_slice])
        return None
 
    platform = platform_split(get_platform())
    if "do0" in platform:
        platform.add("dbg")
    candidates = [
        (len(flags), name)
        for flags, name in [
            (get_flags(name), name)
            for name in (os.listdir(dirname) if os.path.isdir(dirname) else [])
        ]
        if flags and platform.issuperset(flags)
    ]
    if candidates:  # take the one with highest matching
        # FIXME: it is not possible to say if x86_64-slc5-gcc43-dbg
        #        has to use yaml.x86_64-gcc43 or yaml.slc5-dbg
        candidates.sort()
        return os.path.join(dirname, candidates[-1][1])
    return os.path.join(dirname, basename)
 
 

file_path_for_class()

GaudiTesting.utils.file_path_for_class

(

cls

)

Definition at line 396 of file utils.py.

def file_path_for_class(cls):
    return Path(sys.modules[cls.__module__].__file__)
 
 

filter_dict()

Dict[str, Any] GaudiTesting.utils.filter_dict	(	Dict[str, Any]	d,
		re.Pattern	ignore_re )

Recursively filter out keys from the dictionary that match the ignore pattern.

Definition at line 166 of file utils.py.

def filter_dict(d: Dict[str, Any], ignore_re: re.Pattern) -> Dict[str, Any]:
    """
    Recursively filter out keys from the dictionary that match the ignore pattern.
    """
    filteredDict = {}
    for k, v in d.items():
        if not ignore_re.match(k):
            if isinstance(v, dict):
                filteredDict[k] = filter_dict(v, ignore_re)
            else:
                filteredDict[k] = v
    return filteredDict
 
 

find_histos_summaries()

GaudiTesting.utils.find_histos_summaries

(

stdout

)

Scan stdout to find ROOT Histogram summaries and digest them.

Definition at line 351 of file utils.py.

def find_histos_summaries(stdout):
    """
    Scan stdout to find ROOT Histogram summaries and digest them.
    """
    outlines = stdout.splitlines() if hasattr(stdout, "splitlines") else stdout
    nlines = len(outlines) - 1
    summaries = {}
    global h_count_re
 
    pos = 0
    while pos < nlines:
        summ = {}
        # find first line of block:
        match = h_count_re.search(outlines[pos])
        while pos < nlines and not match:
            pos += 1
            match = h_count_re.search(outlines[pos])
        if match:
            summ, pos = _parse_histos_summary(outlines, pos)
        summaries.update(summ)
    return summaries
 
 

find_ttree_summaries()

GaudiTesting.utils.find_ttree_summaries

(

stdout

)

Scan stdout to find ROOT TTree summaries and digest them.

Definition at line 374 of file utils.py.

def find_ttree_summaries(stdout):
    """
    Scan stdout to find ROOT TTree summaries and digest them.
    """
    stars = re.compile(r"^\*+$")
    outlines = stdout.splitlines() if hasattr(stdout, "splitlines") else stdout
    nlines = len(outlines)
    trees = {}
 
    i = 0
    while i < nlines:  # loop over the output
        # look for
        while i < nlines and not stars.match(outlines[i]):
            i += 1
        if i < nlines:
            tree, i = _parse_ttree_summary(outlines, i)
            if tree:
                trees[tree["Name"]] = tree
 
    return trees
 
 

get_platform()

GaudiTesting.utils.get_platform

(

)

Return the platform Id defined in CMTCONFIG or SCRAM_ARCH.

Definition at line 86 of file utils.py.

def get_platform():
    """
    Return the platform Id defined in CMTCONFIG or SCRAM_ARCH.
    """
    arch = "None"
    # check architecture name
    if "BINARY_TAG" in os.environ:
        arch = os.environ["BINARY_TAG"]
    elif "CMTCONFIG" in os.environ:
        arch = os.environ["CMTCONFIG"]
    elif "SCRAM_ARCH" in os.environ:
        arch = os.environ["SCRAM_ARCH"]
    elif os.environ.get("ENV_CMAKE_BUILD_TYPE", "") in (
        "Debug",  # -O0 -g
        "FastDebug",  # -Og -g (LHCb only)
        "Developer",  # same as Debug, but with many warnings enabled
        "",  # no options (equivalent to -O0)
    ):
        arch = "unknown-dbg"
    elif os.environ.get("ENV_CMAKE_BUILD_TYPE", "") in (
        "Release",  # -O3 -DNDEBUG
        "MinSizeRel",  # -Os -DNDEBUG
        "RelWithDebInfo",  # -O2 -g -DNDEBUG (-O3 for LHCb)
    ):
        arch = "unknown-opt"
    return arch
 
 

kill_tree()

GaudiTesting.utils.kill_tree	(		ppid,
			sig )

Send a signal to a process and all its child processes (starting from the
leaves).

Definition at line 43 of file utils.py.

def kill_tree(ppid, sig):
    """
    Send a signal to a process and all its child processes (starting from the
    leaves).
    """
    ps_cmd = ["ps", "--no-headers", "-o", "pid", "--ppid", str(ppid)]
    # Note: start in a clean env to avoid a freeze with libasan.so
    # See https://sourceware.org/bugzilla/show_bug.cgi?id=27653
    get_children = Popen(ps_cmd, stdout=PIPE, stderr=PIPE, env={})
    children = map(int, get_children.communicate()[0].split())
    for child in children:
        kill_tree(child, sig)
    try:
        os.kill(ppid, sig)
    except OSError as err:
        if err.errno != 3:  # No such process
            raise
 
 

platform_matches()

GaudiTesting.utils.platform_matches

(

List[str]

unsupported_platforms

)

Definition at line 31 of file utils.py.

def platform_matches(unsupported_platforms: List[str]):
    platform_id = get_platform()
    return any(re.search(p, platform_id) for p in unsupported_platforms)
 
 
# merci https://stackoverflow.com/a/33300001

str_representer()

GaudiTesting.utils.str_representer	(		dumper,
			data )

Definition at line 37 of file utils.py.

def str_representer(dumper, data):
    if "\n" in data:
        return dumper.represent_scalar("tag:yaml.org,2002:str", data, style="|")
    return dumper.represent_scalar("tag:yaml.org,2002:str", data)
 
 

which()

GaudiTesting.utils.which

(

executable

)

Locates an executable in the executables path ($PATH) and returns the full
path to it.  An application is looked for with or without the '.exe' suffix.
If the executable cannot be found, None is returned

Definition at line 62 of file utils.py.

def which(executable):
    """
    Locates an executable in the executables path ($PATH) and returns the full
    path to it.  An application is looked for with or without the '.exe' suffix.
    If the executable cannot be found, None is returned
    """
    if os.path.isabs(executable):
        if not os.path.isfile(executable):
            if executable.endswith(".exe"):
                if os.path.isfile(executable[:-4]):
                    return executable[:-4]
            else:
                executable = os.path.split(executable)[1]
        else:
            return executable
    for d in os.environ.get("PATH").split(os.pathsep):
        fullpath = os.path.join(d, executable)
        if os.path.isfile(fullpath):
            return fullpath
        elif executable.endswith(".exe") and os.path.isfile(fullpath[:-4]):
            return fullpath[:-4]
    return None
 
 

Variable Documentation

h_count_re

GaudiTesting.utils.h_count_re

Initial value:

=  re.compile(
    r"^(.*)(?:SUCCESS|INFO)\s+Booked (\d+) Histogram\‍(s\‍) :\s+([\s\w=-]*)"
)

Definition at line 197 of file utils.py.