RootDataConnection.cpp

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//====================================================================
//        RootDataConnection.cpp
//--------------------------------------------------------------------
//
//        Author     : M.Frank
//====================================================================

// Framework include files
#include "RootCnv/RootDataConnection.h"
#include "GaudiKernel/DataObject.h"
#include "GaudiKernel/IIncidentSvc.h"
#include "GaudiKernel/IOpaqueAddress.h"
#include "GaudiKernel/IRegistry.h"
#include "GaudiKernel/Incident.h"
#include "GaudiKernel/LinkManager.h"
#include "GaudiKernel/MsgStream.h"
#include "GaudiKernel/strcasecmp.h"
#include "RootUtils.h"
// ROOT include files
#include "TBranch.h"
#include "TClass.h"
#include "TFile.h"
#include "TLeaf.h"
#include "TROOT.h"
#include "TTree.h"
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
#include "Compression.h"
static int s_compressionLevel = ROOT::CompressionSettings( ROOT::kLZMA, 4 );
#else
static int s_compressionLevel = 1;
#endif

// C/C++ include files
#include <numeric>
#include <stdexcept>

using namespace Gaudi;
using namespace std;
typedef const string& CSTR;

static const string s_empty;
static const string s_local = "<localDB>";

#ifdef __POOL_COMPATIBILITY
#include "PoolTool.h"
#endif
#include "RootTool.h"

namespace
{
  std::array<char, 256> init_table()
  {
    std::array<char, 256> table;
    std::iota( std::begin( table ), std::end( table ), 0 );
    return table;
  }
}

static bool match_wild( const char* str, const char* pat )
{
  //
  // Credits: Code from Alessandro Felice Cantatore.
  //
  static const std::array<char, 256> table = init_table();
  const char *s, *p;
  bool star = false;
loopStart:
  for ( s = str, p = pat; *s; ++s, ++p ) {
    switch ( *p ) {
    case '?':
      if ( *s == '.' ) goto starCheck;
      break;
    case '*':
      star = true;
      str = s, pat = p;
      do {
        ++pat;
      } while ( *pat == '*' );
      if ( !*pat ) return true;
      goto loopStart;
    default:
      if ( table[*s] != table[*p] ) goto starCheck;
      break;
    } /* endswitch */
  }   /* endfor */
  while ( *p == '*' ) ++p;
  return ( !*p );

starCheck:
  if ( !star ) return false;
  str++;
  goto loopStart;
}

StatusCode RootConnectionSetup::setCompression( const std::string& compression )
{
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
  int res = 0, level = ROOT::CompressionSettings( ROOT::kLZMA, 6 );
  auto idx = compression.find( ':' );
  if ( idx != string::npos ) {
    string alg                           = compression.substr( 0, idx );
    ROOT::ECompressionAlgorithm alg_code = ROOT::kUseGlobalSetting;
    if ( strcasecmp( alg.c_str(), "ZLIB" ) == 0 )
      alg_code = ROOT::kZLIB;
    else if ( strcasecmp( alg.c_str(), "LZMA" ) == 0 )
      alg_code = ROOT::kLZMA;
    else
      throw runtime_error( "ERROR: request to set unknown ROOT compression algorithm:" + alg );
    res = ::sscanf( compression.c_str() + idx + 1, "%d", &level );
    if ( res == 1 ) {
      s_compressionLevel = ROOT::CompressionSettings( alg_code, level );
      return StatusCode::SUCCESS;
    }
    throw runtime_error( "ERROR: request to set unknown ROOT compression level:" + compression.substr( idx + 1 ) );
  } else if ( 1 == ::sscanf( compression.c_str(), "%d", &level ) ) {
    s_compressionLevel = level;
    return StatusCode::SUCCESS;
  }
  throw runtime_error( "ERROR: request to set unknown ROOT compression mechanism:" + compression );
#else
  if ( !compression.empty() ) {
  }
  return StatusCode::SUCCESS;
#endif
}

int RootConnectionSetup::compression() { return s_compressionLevel; }

void RootConnectionSetup::setMessageSvc( MsgStream* m ) { m_msgSvc.reset( m ); }

void RootConnectionSetup::setIncidentSvc( IIncidentSvc* s ) { m_incidentSvc.reset( s ); }

RootDataConnection::RootDataConnection( const IInterface* owner, CSTR fname,
                                        std::shared_ptr<RootConnectionSetup> setup )
    : IDataConnection( owner, fname ), m_setup( std::move( setup ) )
{ //               01234567890123456789012345678901234567890
  // Check if FID: A82A3BD8-7ECB-DC11-8DC0-000423D950B0
  if ( fname.length() == 36 && fname[8] == '-' && fname[13] == '-' && fname[18] == '-' && fname[23] == '-' ) {
    m_name = "FID:" + fname;
  }
  m_age = 0;
  m_file.reset();
  addClient( owner );
}

void RootDataConnection::addClient( const IInterface* client ) { m_clients.insert( client ); }

size_t RootDataConnection::removeClient( const IInterface* client )
{
  auto i = m_clients.find( client );
  if ( i != m_clients.end() ) m_clients.erase( i );
  return m_clients.size();
}

bool RootDataConnection::lookupClient( const IInterface* client ) const
{
  auto i = m_clients.find( client );
  return i != m_clients.end();
}

void RootDataConnection::badWriteError( const string& msg ) const
{
  msgSvc() << MSG::ERROR << "File:" << fid() << "Failed action:" << msg << endmsg;
}

void RootDataConnection::saveStatistics( CSTR statisticsFile )
{
  if ( m_statistics ) {
    m_statistics->Print();
    if ( !statisticsFile.empty() ) m_statistics->SaveAs( statisticsFile.c_str() );
    m_statistics.reset();
  }
}

void RootDataConnection::enableStatistics( CSTR section )
{
  if ( m_statistics ) {
    TTree* t = getSection( section, false );
    if ( t ) {
      m_statistics.reset( new TTreePerfStats( ( section + "_ioperf" ).c_str(), t ) );
      return;
    }
    msgSvc() << MSG::WARNING << "Failed to enable perfstats for tree:" << section << endmsg;
    return;
  }
  msgSvc() << MSG::INFO << "Perfstats are ALREADY ENABLED." << endmsg;
}

RootDataConnection::Tool* RootDataConnection::makeTool()
{
  if ( !m_refs ) m_refs = (TTree*)m_file->Get( "Refs" );
  if ( m_refs ) m_tool.reset( new RootTool( this ) );
#ifdef __POOL_COMPATIBILITY
  else if ( m_file->Get( "##Links" ) != nullptr )
    m_tool.reset( new PoolTool( this ) );
#endif
  else
    m_tool.reset();
  return m_tool.get();
}

StatusCode RootDataConnection::connectRead()
{
  m_file.reset( TFile::Open( m_pfn.c_str() ) );
  if ( !m_file || m_file->IsZombie() ) {
    m_file.reset();
    return StatusCode::FAILURE;
  }
  StatusCode sc = StatusCode::FAILURE;
  msgSvc() << MSG::DEBUG << "Opened file " << m_pfn << " in mode READ. [" << m_fid << "]" << endmsg << MSG::DEBUG;
  if ( msgSvc().isActive() ) m_file->ls();
  msgSvc() << MSG::VERBOSE;
  if ( msgSvc().isActive() ) m_file->Print();
  if ( makeTool() ) {
    sc = m_tool->readRefs();
    sc.ignore();
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
    if ( sc == ROOT_READ_ERROR ) {
      IIncidentSvc* inc = m_setup->incidentSvc();
      if ( inc ) {
        inc->fireIncident( Incident( pfn(), IncidentType::CorruptedInputFile ) );
      }
    }
#endif
  }
  if ( !sc.isSuccess() ) return sc;
  bool need_fid = m_fid == m_pfn;
  string fid    = m_fid;
  m_mergeFIDs.clear();
  for ( auto& elem : m_params ) {
    if ( elem.first == "FID" ) {
      m_mergeFIDs.push_back( elem.second );
      if ( elem.second != m_fid ) {
        msgSvc() << MSG::DEBUG << "Check FID param:" << elem.second << endmsg;
        // if ( m_fid == m_pfn ) {
        m_fid = elem.second;
        //}
      }
    }
  }
  if ( !need_fid && fid != m_fid ) {
    msgSvc() << MSG::ERROR << "FID mismatch:" << fid << "(Catalog) != " << m_fid << "(file)" << endmsg
             << "for PFN:" << m_pfn << endmsg;
    return StatusCode::FAILURE;
  }
  msgSvc() << MSG::DEBUG << "Using FID " << m_fid << " from params table...." << endmsg << "for PFN:" << m_pfn
           << endmsg;
  return sc;
}

StatusCode RootDataConnection::connectWrite( IoType typ )
{
  int compress = RootConnectionSetup::compression();
  msgSvc() << MSG::DEBUG;
  switch ( typ ) {
  case CREATE:
    resetAge();
    m_file.reset( TFile::Open( m_pfn.c_str(), "CREATE", "Root event data", compress ) );
    m_refs = new TTree( "Refs", "Root reference data" );
    msgSvc() << "Opened file " << m_pfn << " in mode CREATE. [" << m_fid << "]" << endmsg;
    m_params.emplace_back( "PFN", m_pfn );
    if ( m_fid != m_pfn ) {
      m_params.emplace_back( "FID", m_fid );
    }
    makeTool();
    break;
  case RECREATE:
    resetAge();
    m_file.reset( TFile::Open( m_pfn.c_str(), "RECREATE", "Root event data", compress ) );
    msgSvc() << "Opened file " << m_pfn << " in mode RECREATE. [" << m_fid << "]" << endmsg;
    m_refs = new TTree( "Refs", "Root reference data" );
    m_params.emplace_back( "PFN", m_pfn );
    if ( m_fid != m_pfn ) {
      m_params.emplace_back( "FID", m_fid );
    }
    makeTool();
    break;
  case UPDATE:
    resetAge();
    m_file.reset( TFile::Open( m_pfn.c_str(), "UPDATE", "Root event data", compress ) );
    msgSvc() << "Opened file " << m_pfn << " in mode UPDATE. [" << m_fid << "]" << endmsg;
    if ( m_file && !m_file->IsZombie() ) {
      if ( makeTool() ) {
        StatusCode sc = m_tool->readRefs();
        sc.ignore();
        if ( sc == ROOT_READ_ERROR ) {
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
          IIncidentSvc* inc = m_setup->incidentSvc();
          if ( inc ) {
            inc->fireIncident( Incident( pfn(), IncidentType::CorruptedInputFile ) );
          }
#endif
        }
        return sc;
      }
      TDirectory::TContext ctxt( m_file.get() );
      m_refs = new TTree( "Refs", "Root reference data" );
      makeTool();
      return StatusCode::SUCCESS;
    }
    break;
  default:
    m_refs = nullptr;
    m_file.reset();
    return StatusCode::FAILURE;
  }
  return m_file ? StatusCode::SUCCESS : StatusCode::FAILURE;
}

StatusCode RootDataConnection::disconnect()
{
  if ( m_file ) {
    if ( !m_file->IsZombie() ) {
      if ( m_file->IsWritable() ) {
        msgSvc() << MSG::DEBUG;
        TDirectory::TContext ctxt( m_file.get() );
        if ( m_refs ) {
          if ( !m_tool->saveRefs().isSuccess() ) badWriteError( "Saving References" );
          if ( m_refs->Write() < 0 ) badWriteError( "Write Reference branch" );
        }
        for ( auto& i : m_sections ) {
          if ( i.second ) {
            if ( i.second->Write() < 0 ) badWriteError( "Write section:" + i.first );
            msgSvc() << "Disconnect section " << i.first << " " << i.second->GetName() << endmsg;
          }
        }
        m_sections.clear();
      }
      msgSvc() << MSG::DEBUG;
      if ( msgSvc().isActive() ) m_file->ls();
      msgSvc() << MSG::VERBOSE;
      if ( msgSvc().isActive() ) m_file->Print();
      m_file->Close();
    }
    msgSvc() << MSG::DEBUG << "Disconnected file " << m_pfn << " " << m_file->GetName() << endmsg;
    m_file.reset();
    m_tool.reset();
  }
  return StatusCode::SUCCESS;
}

TTree* RootDataConnection::getSection( CSTR section, bool create )
{
  TTree* t = m_sections[section];
  if ( !t ) {
    t = (TTree*)m_file->Get( section.c_str() );
    if ( !t && create ) {
      TDirectory::TContext ctxt( m_file.get() );
      t = new TTree( section.c_str(), "Root data for Gaudi" );
    }
    if ( t ) {
      int cacheSize = m_setup->cacheSize;
      if ( create ) {
        // t->SetAutoFlush(100);
      }
      if ( section == m_setup->loadSection && cacheSize > -2 ) {
        MsgStream& msg   = msgSvc();
        int learnEntries = m_setup->learnEntries;
        t->SetCacheSize( cacheSize );
        t->SetCacheLearnEntries( learnEntries );
        msg << MSG::DEBUG;
        if ( create ) {
          msg << "Tree:" << section << "Setting up tree cache:" << cacheSize << endmsg;
        } else {
          const StringVec& vB = m_setup->vetoBranches;
          const StringVec& cB = m_setup->cacheBranches;
          msg << "Tree:" << section << " Setting up tree cache:" << cacheSize << " Add all branches." << endmsg;
          msg << "Tree:" << section << " Learn for " << learnEntries << " entries." << endmsg;

          if ( cB.empty() && vB.empty() ) {
            msg << "Adding (default) all branches to tree cache." << endmsg;
            t->AddBranchToCache( "*", kTRUE );
          }
          if ( cB.size() == 1 && cB[0] == "*" ) {
            msg << "Adding all branches to tree cache according to option \"CacheBranches\"." << endmsg;
            t->AddBranchToCache( "*", kTRUE );
          } else {
            for ( TIter it( t->GetListOfBranches() ); it.Next(); ) {
              const char* n = ( (TNamed*)( *it ) )->GetName();
              bool add = false, veto = false;
              for ( const auto& i : cB ) {
                if ( !match_wild( n, ( i ).c_str() ) ) continue;
                add = true;
                break;
              }
              for ( auto i = vB.cbegin(); !add && i != vB.cend(); ++i ) {
                if ( !match_wild( n, ( *i ).c_str() ) ) continue;
                veto = true;
                break;
              }
              if ( add && !veto ) {
                msg << "Add " << n << " to branch cache." << endmsg;
                t->AddBranchToCache( n, kTRUE );
              } else {
                msg << "Do not cache branch " << n << endmsg;
              }
            }
          }
        }
      }
      m_sections[section] = t;
    }
  }
  return t;
}

TBranch* RootDataConnection::getBranch( CSTR section, CSTR branch_name, TClass* cl, void* ptr, int buff_siz,
                                        int split_lvl )
{
  string n = branch_name;
  std::replace_if( std::begin( n ), std::end( n ), []( const char c ) { return !isalnum( c ); }, '_' );
  n += ".";
  TTree* t   = getSection( section, true );
  TBranch* b = t->GetBranch( n.c_str() );
  if ( !b && cl && m_file->IsWritable() ) {
    b = t->Branch( n.c_str(), cl->GetName(), (void*)( ptr ? &ptr : nullptr ), buff_siz, split_lvl );
  }
  if ( !b ) b = t->GetBranch( branch_name.c_str() );
  if ( b ) b->SetAutoDelete( kFALSE );
  return b;
}

int RootDataConnection::makeLink( CSTR p )
{
  auto ip = std::find( std::begin( m_links ), std::end( m_links ), p );
  if ( ip != std::end( m_links ) ) return std::distance( std::begin( m_links ), ip );
  m_links.push_back( p );
  return m_links.size() - 1;
}

CSTR RootDataConnection::getDb( int which ) const
{
  if ( ( which >= 0 ) && ( size_t( which ) < m_dbs.size() ) ) {
    if ( *( m_dbs.begin() + which ) == s_local ) return m_fid;
    return *( m_dbs.begin() + which );
  }
  return s_empty;
}

CSTR RootDataConnection::empty() const { return s_empty; }

pair<int, unsigned long> RootDataConnection::saveObj( CSTR section, CSTR cnt, TClass* cl, DataObject* pObj,
                                                      int buff_siz, int split_lvl, bool fill )
{
  DataObjectPush push( pObj );
  return save( section, cnt, cl, pObj, buff_siz, split_lvl, fill );
}

pair<int, unsigned long> RootDataConnection::save( CSTR section, CSTR cnt, TClass* cl, void* pObj, int buff_siz,
                                                   int split_lvl, bool fill_missing )
{
  split_lvl  = 0;
  TBranch* b = getBranch( section, cnt, cl, pObj ? &pObj : nullptr, buff_siz, split_lvl );
  if ( b ) {
    Long64_t evt = b->GetEntries();
    // msgSvc() << MSG::DEBUG << cnt.c_str() << " Obj:" << (void*)pObj
    //         << " Split:" << split_lvl << " Buffer size:" << buff_siz << endl;
    if ( fill_missing ) {
      Long64_t num, nevt = b->GetTree()->GetEntries();
      if ( nevt > evt ) {
        b->SetAddress( nullptr );
        num = nevt - evt;
        while ( num > 0 ) {
          b->Fill();
          --num;
        }
        msgSvc() << MSG::DEBUG << "Added " << long( nevt - evt ) << " / Tree: " << nevt
                 << " / Branch: " << b->GetEntries() + 1 << " NULL entries to:" << cnt << endmsg;
        evt = b->GetEntries();
      }
    }
    b->SetAddress( &pObj );
    return {b->Fill(), evt};
  }
  if ( pObj ) {
    msgSvc() << MSG::ERROR << "Failed to access branch " << m_name << "/" << cnt << endmsg;
  }
  return {-1, ~0};
}

int RootDataConnection::loadObj( CSTR section, CSTR cnt, unsigned long entry, DataObject*& pObj )
{
  TBranch* b = getBranch( section, cnt );
  if ( b ) {
    TClass* cl = gROOT->GetClass( b->GetClassName(), kTRUE );
    if ( cl ) {
      int nb = -1;
      pObj   = (DataObject*)cl->New();
      {
        DataObjectPush push( pObj );
        b->SetAddress( &pObj );
        if ( section == m_setup->loadSection ) {
          TTree* t = b->GetTree();
          if ( Long64_t( entry ) != t->GetReadEntry() ) {
            t->LoadTree( Long64_t( entry ) );
          }
        }
        nb = b->GetEntry( entry );
        msgSvc() << MSG::VERBOSE;
        if ( msgSvc().isActive() ) {
          msgSvc() << "Load [" << entry << "] --> " << section << ":" << cnt << "  " << nb << " bytes." << endmsg;
        }
        if ( nb < 0 ) { // This is definitely an error...ROOT says if reads fail, -1 is issued.
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
          IIncidentSvc* inc = m_setup->incidentSvc();
          if ( inc ) {
            inc->fireIncident( Incident( pfn(), IncidentType::CorruptedInputFile ) );
          }
#endif
        } else if ( nb == 0 && pObj->clID() == CLID_DataObject ) {
          TFile* f = b->GetFile();
          int vsn  = f->GetVersion();
          if ( vsn < 52400 ) {
            // For Gaudi v21r5 (ROOT 5.24.00b) DataObject::m_version was not written!
            // Still this call be well be successful.
            nb = 1;
          } else if ( vsn > 1000000 && ( vsn % 1000000 ) < 52400 ) {
            // dto. Some POOL files have for unknown reasons a version
            // not according to ROOT standards. Hack this explicitly.
            nb = 1;
          }
        }
        if ( nb < 0 ) {
          delete pObj;
          pObj = nullptr;
        }
      }
      return nb;
    }
  }
  return -1;
}

int RootDataConnection::loadRefs( const std::string& section, const std::string& cnt, unsigned long entry,
                                  RootObjectRefs& refs )
{
  int nbytes = m_tool->loadRefs( section, cnt, entry, refs );
#if ROOT_VERSION_CODE >= ROOT_VERSION( 5, 33, 0 )
  if ( nbytes < 0 ) {
    // This is definitely an error:
    // -- Either branch not preesent at all or
    // -- ROOT I/O error, which issues -1
    IIncidentSvc* inc = m_setup->incidentSvc();
    if ( inc ) {
      inc->fireIncident( Incident( pfn(), IncidentType::CorruptedInputFile ) );
    }
  }
#endif
  return nbytes;
}

pair<const RootRef*, const RootDataConnection::ContainerSection*>
RootDataConnection::getMergeSection( const string& container, int entry ) const
{
  // size_t idx = cont.find('/',1);
  // string container = cont[0]=='/' ? cont.substr(1,idx==string::npos?idx:idx-1) : cont;
  auto i = m_mergeSects.find( container );
  if ( i != m_mergeSects.end() ) {
    size_t cnt                 = 0;
    const ContainerSections& s = ( *i ).second;
    for ( auto j = s.cbegin(); j != s.cend(); ++j, ++cnt ) {
      const ContainerSection& c = *j;
      if ( entry >= c.start && entry < ( c.start + c.length ) ) {
        if ( m_linkSects.size() > cnt ) {
          if ( msgSvc().isActive() ) {
            msgSvc() << MSG::VERBOSE << "MergeSection for:" << container << "  [" << entry << "]" << endmsg
                     << "FID:" << m_fid << " -> PFN:" << m_pfn << endmsg;
          }
          return {&( m_linkSects[cnt] ), &c};
        }
      }
    }
  }
  msgSvc() << MSG::DEBUG << "Return INVALID MergeSection for:" << container << "  [" << entry << "]" << endmsg
           << "FID:" << m_fid << " -> PFN:" << m_pfn << endmsg;
  return {nullptr, nullptr};
}

void RootDataConnection::makeRef( IRegistry* pR, RootRef& ref )
{
  IOpaqueAddress* pA = pR->address();
  makeRef( pR->name(), pA->clID(), pA->svcType(), pA->par()[0], pA->par()[1], -1, ref );
}

void RootDataConnection::makeRef( CSTR name, long clid, int tech, CSTR dbase, CSTR cnt, int entry, RootRef& ref )
{
  string db( dbase );
  if ( db == m_fid ) db = s_local;
  ref.entry             = entry;

  int cdb = -1;
  if ( !db.empty() ) {
    auto idb = std::find_if( m_dbs.begin(), m_dbs.end(), [&]( const std::string& i ) { return i == db; } );
    cdb      = std::distance( m_dbs.begin(), idb );
    if ( idb == m_dbs.end() ) m_dbs.push_back( db );
  }

  int ccnt = -1;
  if ( !cnt.empty() ) {
    auto icnt = std::find_if( m_conts.begin(), m_conts.end(), [&]( const std::string& i ) { return i == cnt; } );
    ccnt      = std::distance( m_conts.begin(), icnt );
    if ( icnt == m_conts.end() ) m_conts.push_back( cnt );
  }

  int clnk = -1;
  if ( !name.empty() ) {
    auto ilnk = std::find_if( m_links.begin(), m_links.end(), [&]( const std::string& i ) { return i == name; } );
    clnk      = std::distance( m_links.begin(), ilnk );
    if ( ilnk == m_links.end() ) m_links.push_back( name );
  }

  ref.dbase     = cdb;
  ref.container = ccnt;
  ref.link      = clnk;
  ref.clid      = clid;
  ref.svc       = tech;
  if ( ref.svc == POOL_ROOT_StorageType || ref.svc == POOL_ROOTKEY_StorageType ||
       ref.svc == POOL_ROOTTREE_StorageType ) {
    ref.svc = ROOT_StorageType;
  }
}