gaudirun.py

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#!/usr/bin/env python3
 
 
import os
import sys
from tempfile import mkstemp
 
 
def getArgsWithoutProfilerInfo(args):
    """
    Remove from the arguments the presence of the profiler and its output in
    order to relaunch the script w/o infinite loops.
 
    >>> getArgsWithoutProfilerInfo(['--profilerName', 'igprof', 'myopts.py'])
    ['myopts.py']
 
    >>> getArgsWithoutProfilerInfo(['--profilerName=igprof', 'myopts.py'])
    ['myopts.py']
 
    >>> getArgsWithoutProfilerInfo(['--profilerName', 'igprof', '--profilerExtraOptions', 'a b c', 'myopts.py'])
    ['myopts.py']
 
    >>> getArgsWithoutProfilerInfo(['--profilerName', 'igprof', '--options', 'a b c', 'myopts.py'])
    ['--options', 'a b c', 'myopts.py']
    """
    newargs = []
    args = list(args)  # make a temp copy
    while args:
        o = args.pop(0)
        if o.startswith("--profile"):
            if "=" not in o:
                args.pop(0)
        else:
            newargs.append(o)
    return newargs
 
 
def setLibraryPreload(newpreload):
    """Adds  a list of libraries to LD_PRELOAD"""
    preload = os.environ.get("LD_PRELOAD", "")
    if preload:
        preload = preload.replace(" ", ":").split(":")
    else:
        preload = []
 
    for libname in set(preload).intersection(newpreload):
        logging.warning(
            "Ignoring preload of library %s because it is " "already in LD_PRELOAD.",
            libname,
        )
 
    to_load = [libname for libname in newpreload if libname not in set(preload)]
 
    if to_load:
        preload += to_load
        preload = ":".join(preload)
        os.environ["LD_PRELOAD"] = preload
        logging.info("Setting LD_PRELOAD='%s'", preload)
 
    return to_load
 
 
def rationalizepath(path):
    """
    Convert the given path to a real path if the pointed file exists, otherwise
    just normalize it.
    """
    path = os.path.normpath(os.path.expandvars(path))
    if os.path.exists(path):
        path = os.path.realpath(path)
    return path
 
 
# variable used to keep alive the temporary option files extracted
# from the .qmt
_qmt_tmp_opt_files = []
 
 
def getArgsFromQmt(qmtfile):
    """
    Given a .qmt file, return the command line arguments of the corresponding
    test.
    """
    from xml.etree import ElementTree as ET
 
    global _qmt_tmp_opt_files
    # parse the .qmt file and extract args and options
    qmt = ET.parse(qmtfile)
    args = [a.text for a in qmt.findall("argument[@name='args']//text")]
    options = qmt.find("argument[@name='options']/text")
 
    if (
        options is not None and options.text is not None
    ):  # options need to be dumped in a temporary file
        import re
        from tempfile import NamedTemporaryFile
 
        if re.search(
            r"from\s+Gaudi.Configuration\s+import\s+\*"
            r"|from\s+Configurables\s+import",
            options.text,
        ):
            tmp_opts = NamedTemporaryFile(suffix=".py")
        else:
            tmp_opts = NamedTemporaryFile(suffix=".opts")
        tmp_opts.write(options.text.encode("ascii"))
        tmp_opts.flush()
        args.append(tmp_opts.name)
        _qmt_tmp_opt_files.append(tmp_opts)
 
    # relative paths in a .qmt are rooted in the qmtest directory, so
    # - find where the .qmt lives
    qmtfile = os.path.abspath(qmtfile)
    if "qmtest" in qmtfile.split(os.path.sep):
        # this return the path up to the 'qmtest' entry in qmtfile
        testdir = qmtfile
        while os.path.basename(testdir) != "qmtest":
            testdir = os.path.dirname(testdir)
    else:
        testdir = "."
    # - temporarily switch to that directory and rationalize the paths
    old_cwd = os.getcwd()
    os.chdir(testdir)
    args = [rationalizepath(arg) for arg in args]
    os.chdir(old_cwd)
 
    return args
 
 
# ---------------------------------------------------------------------
if __name__ == "__main__":
    # ensure that we (and the subprocesses) use the C standard localization
    if os.environ.get("LC_ALL") != "C":
        print('# setting LC_ALL to "C"')
        # !!!!
        os.environ["LC_ALL"] = "C"
 
    from optparse import OptionParser
 
    parser = OptionParser(usage="%prog [options] <opts_file|function_id> ...")
    parser.add_option(
        "-n",
        "--dry-run",
        action="store_true",
        help="do not run the application, just parse option files",
    )
    parser.add_option(
        "-p",
        "--pickle-output",
        action="store",
        type="string",
        metavar="FILE",
        help="DEPRECATED: use '--output file.pkl' instead. Write "
        "the parsed options as a pickle file (static option "
        "file)",
    )
    parser.add_option(
        "-v", "--verbose", action="store_true", help="print the parsed options"
    )
    parser.add_option(
        "--old-opts",
        action="store_true",
        help="format printed options in old option files style",
    )
    parser.add_option(
        "--all-opts",
        action="store_true",
        help="print all the option (even if equal to default)",
    )
    # GaudiPython Parallel Mode Option
    #   Argument must be an integer in range [ -1, sys_cpus ]
    #   -1   : All available cpus
    #    0   : Serial Mode (traditional gaudirun)
    #    n>0 : parallel with n cpus (n <= sys_cpus)
    parser.add_option(
        "--ncpus",
        action="store",
        type="int",
        default=0,
        help="start the application in parallel mode using NCPUS processes. "
        "0 => serial mode (default), -1 => use all CPUs",
    )
 
    def option_cb(option, opt, value, parser):
        """Add the option line to a list together with its position in the
        argument list.
        """
        parser.values.options.append((len(parser.largs), value))
 
    parser.add_option(
        "--option",
        action="callback",
        callback=option_cb,
        type="string",
        nargs=1,
        help="add a single line (Python) option to the configuration. "
        "All options lines are executed, one after the other, in "
        "the same context.",
    )
    parser.add_option(
        "--no-conf-user-apply",
        action="store_true",
        help="disable the automatic application of configurable "
        "users (for backward compatibility)",
    )
    parser.add_option(
        "--old-conf-user-apply",
        action="store_true",
        help="use the old logic when applying ConfigurableUsers "
        "(with bug #103803) [default]",
    )
    parser.add_option(
        "--new-conf-user-apply",
        action="store_false",
        dest="old_conf_user_apply",
        help="use the new (correct) logic when applying "
        "ConfigurableUsers (fixed bug #103803), can be "
        "turned on also with the environment variable "
        "GAUDI_FIXED_APPLY_CONF",
    )
    parser.add_option(
        "-o",
        "--output",
        action="store",
        type="string",
        help="dump the configuration to a file. The format of "
        "the options is determined by the extension of the "
        "file name: .pkl = pickle, .py = python, .opts = "
        "old style options. The python format cannot be "
        "used to run the application and it contains the "
        "same dictionary printed with -v",
    )
    parser.add_option(
        "--post-option",
        action="append",
        type="string",
        dest="post_options",
        help="Python options to be executed after the ConfigurableUser "
        "are applied. "
        "All options lines are executed, one after the other, in "
        "the same context.",
    )
    parser.add_option(
        "--debug", action="store_true", help="enable some debug print-out"
    )
    parser.add_option("--gdb", action="store_true", help="attach gdb")
    parser.add_option("--printsequence", action="store_true", help="print the sequence")
    if not sys.platform.startswith("win"):
        # These options can be used only on unix platforms
        parser.add_option(
            "-T",
            "--tcmalloc",
            action="store_true",
            help="Use the Google malloc replacement. The environment "
            "variable TCMALLOCLIB can be used to specify a different "
            "name for the library (the default is libtcmalloc.so)",
        )
        parser.add_option(
            "--preload",
            action="append",
            help="Allow pre-loading of special libraries (e.g. Google "
            "profiling libraries).",
        )
        # Option to use a profiler
        parser.add_option(
            "--profilerName",
            type="string",
            help="Select one profiler among: igprofPerf, igprofMem and valgrind<toolname>",
        )
 
        # Option to specify the filename where to collect the profiler's output
        parser.add_option(
            "--profilerOutput",
            type="string",
            help="Specify the name of the output file for the profiler output",
        )
 
        # Option to specify the filename where to collect the profiler's output
        parser.add_option(
            "--profilerExtraOptions",
            type="string",
            help="Specify additional options for the profiler. The '--' string should be expressed as '__' (--my-opt becomes __my-opt)",
        )
 
    parser.add_option(
        "--use-temp-opts",
        action="store_true",
        help="when this option is enabled, the options are parsed"
        " and stored in a temporary file, then the job is "
        "restarted using that file as input (to save "
        "memory)",
    )
    parser.add_option(
        "--run-info-file",
        type="string",
        help="Save gaudi process information to the file specified (in JSON format)",
    )
    parser.add_option(
        "--application",
        help="name of the Gaudi::Application to use [default: %default]",
    )
 
    parser.set_defaults(
        options=[],
        tcmalloc=False,
        profilerName="",
        profilerOutput="",
        profilerExtraOptions="",
        preload=[],
        ncpus=None,
        # the old logic can be turned off with an env variable
        old_conf_user_apply="GAUDI_FIXED_APPLY_CONF" not in os.environ,
        run_info_file=None,
        application="Gaudi::Application",
    )
 
    # replace .qmt files in the command line with their contained args
    argv = []
    for a in sys.argv[1:]:
        if a.endswith(".qmt") and os.path.exists(a):
            argv.extend(getArgsFromQmt(a))
        else:
            argv.append(a)
    if argv != sys.argv[1:]:
        print("# Running", sys.argv[0], "with arguments", argv)
 
    opts, args = parser.parse_args(args=argv)
 
    # Check consistency of options
 
    # Parallel Option ---------------------------------------------------------
    if opts.ncpus:
        from multiprocessing import cpu_count
 
        sys_cpus = cpu_count()
        if opts.ncpus > sys_cpus:
            s = "Invalid value : --ncpus : only %i cpus available" % sys_cpus
            parser.error(s)
        elif opts.ncpus < -1:
            s = "Invalid value : --ncpus must be integer >= -1"
            parser.error(s)
    else:
        # FIXME: is it really needed to set it to None if it is 0 or False?
        opts.ncpus = None
 
    # configure the logging
    import logging
 
    from GaudiKernel.ProcessJobOptions import InstallRootLoggingHandler, PrintOff
 
    if opts.old_opts:
        prefix = "// "
    else:
        prefix = "# "
    level = logging.INFO
    if opts.debug:
        level = logging.DEBUG
    InstallRootLoggingHandler(prefix, level=level, with_time=opts.debug)
    root_logger = logging.getLogger()
 
    # Sanitizer support
    sanitizers = os.environ.get("PRELOAD_SANITIZER_LIB", "")
    preload = os.environ.get("LD_PRELOAD", "")
    if sanitizers:
        os.environ["PRELOAD_SANITIZER_LIB"] = ""
        if preload and sanitizers != preload:
            logging.warning(
                "Ignoring PRELOAD_SANITIZER_LIB (={}) as LD_PRELOAD (={}) is "
                "different and takes precedence.".format(sanitizers, preload)
            )
        else:
            for sanitizer in reversed(sanitizers.split(":")):
                if sanitizer not in preload:
                    opts.preload.insert(0, sanitizer)
            if opts.profilerName == "jemalloc":
                logging.warning("jemalloc disabled when using a sanitizer")
                opts.profilerName = None
 
    # tcmalloc support
    if opts.tcmalloc:
        # Disable tcmalloc if sanitizer is selected
        if sanitizers:
            logging.warning("tcmalloc preload disabled when using a sanitizer")
        else:
            opts.preload.insert(0, os.environ.get("TCMALLOCLIB", "libtcmalloc.so"))
 
    # allow preloading of libraries
    if opts.preload:
        preload = os.environ.get("LD_PRELOAD", "")
        if preload:
            preload = preload.replace(" ", ":").split(":")
        else:
            preload = []
        for libname in set(preload).intersection(opts.preload):
            logging.warning(
                "Ignoring preload of library %s because it is "
                "already in LD_PRELOAD.",
                libname,
            )
        to_load = [libname for libname in opts.preload if libname not in set(preload)]
        if to_load:
            preload += to_load
            preload = ":".join(preload)
            os.environ["LD_PRELOAD"] = preload
            logging.info("Restarting with LD_PRELOAD='%s'", preload)
            # remove the --tcmalloc option from the arguments
            # FIXME: the --preload arguments will issue a warning but it's tricky to remove them
            args = [a for a in sys.argv if a != "-T" and not "--tcmalloc".startswith(a)]
            os.execv(sys.executable, [sys.executable] + args)
 
    # Profiler Support ------
    if opts.profilerName:
        profilerName = opts.profilerName
        profilerExecName = ""
        profilerOutput = opts.profilerOutput or (profilerName + ".output")
 
        # To restart the application removing the igprof option and prepending the string
        args = getArgsWithoutProfilerInfo(sys.argv)
 
        igprofPerfOptions = "-d -pp -z -o igprof.pp.gz".split()
 
        profilerOptions = ""
        if profilerName == "igprof":
            if not opts.profilerOutput:
                profilerOutput += ".profile.gz"
            profilerOptions = "-d -z -o %s" % profilerOutput
            profilerExecName = "igprof"
 
        elif profilerName == "igprofPerf":
            if not opts.profilerOutput:
                profilerOutput += ".pp.gz"
            profilerOptions = "-d -pp -z -o %s" % profilerOutput
            profilerExecName = "igprof"
 
        elif profilerName == "igprofMem":
            if not opts.profilerOutput:
                profilerOutput += ".mp.gz"
            profilerOptions = "-d -mp -z -o %s" % profilerOutput
            profilerExecName = "igprof"
 
        elif "valgrind" in profilerName:
            # extract the tool
            if not opts.profilerOutput:
                profilerOutput += ".log"
            toolname = profilerName.replace("valgrind", "")
            outoption = "--log-file"
            if toolname in ("massif", "callgrind", "cachegrind"):
                outoption = "--%s-out-file" % toolname
            profilerOptions = "--tool=%s %s=%s" % (toolname, outoption, profilerOutput)
            profilerExecName = "valgrind"
 
        elif profilerName == "jemalloc":
            opts.preload.insert(0, os.environ.get("JEMALLOCLIB", "libjemalloc.so"))
            os.environ["MALLOC_CONF"] = "prof:true,prof_leak:true"
        else:
            root_logger.warning("Profiler %s not recognized!" % profilerName)
 
        # Add potential extra options
        if opts.profilerExtraOptions != "":
            profilerExtraOptions = opts.profilerExtraOptions
            profilerExtraOptions = profilerExtraOptions.replace("__", "--")
            profilerOptions += " %s" % profilerExtraOptions
 
        # now we look for the full path of the profiler: is it really there?
        if profilerExecName:
            import distutils.spawn
 
            profilerPath = distutils.spawn.find_executable(profilerExecName)
            if not profilerPath:
                root_logger.error("Cannot locate profiler %s" % profilerExecName)
                sys.exit(1)
 
        root_logger.info(
            "------ Profiling options are on ------ \n"
            " o Profiler: %s\n"
            " o Options: '%s'.\n"
            " o Output: %s"
            % (profilerExecName or profilerName, profilerOptions, profilerOutput)
        )
 
        # allow preloading of libraries
        # That code need to be acsracted from above
        to_reload = []
        if opts.preload:
            to_reload = setLibraryPreload(opts.preload)
 
        if profilerExecName:
            # We profile python
            profilerOptions += " python"
 
            # now we have all the ingredients to prepare our command
            arglist = [profilerPath] + profilerOptions.split() + args
            arglist = [a for a in arglist if a != ""]
            # print profilerPath
            # for arg in arglist:
            # print arg
            os.execv(profilerPath, arglist)
        else:
            arglist = [a for a in sys.argv if not a.startswith("--profiler")]
            os.execv(sys.executable, [sys.executable] + arglist)
 
    # End Profiler Support ------
 
    if opts.pickle_output:
        if opts.output:
            root_logger.error(
                "Conflicting options: use only --pickle-output or --output"
            )
            sys.exit(1)
        else:
            root_logger.warning("--pickle-output is deprecated, use --output instead")
            opts.output = opts.pickle_output
 
    from Gaudi.Main import gaudimain
 
    c = gaudimain()
 
    class ArgProcessor:
        """
        Helper class to be able to process option files or options
        callables as they come along in the arguments.
        """
 
        def __init__(self, initial_config=None):
            self.config = {} if initial_config is None else initial_config
 
        def __call__(self, arg):
            from GaudiConfig2 import CALLABLE_FORMAT, invokeConfig, mergeConfigs
 
            from Gaudi.Configuration import importOptions
 
            if CALLABLE_FORMAT.match(arg):
                self.config = mergeConfigs(self.config, invokeConfig(arg))
            else:
                importOptions(arg)
 
    process = ArgProcessor()
 
    # Prepare the "configuration script" to parse (like this it is easier than
    # having a list with files and python commands, with an if statements that
    # decides to do importOptions or exec)
    options = ["process({!r})".format(arg) for arg in args]
    # The option lines are inserted into the list of commands using their
    # position on the command line
    optlines = list(opts.options)
    # this allows to avoid to have to care about corrections of the positions
    optlines.reverse()
    for pos, l in optlines:
        options.insert(pos, l)
 
    # prevent the usage of GaudiPython
    class FakeModule(object):
        def __init__(self, exception):
            self.exception = exception
 
        def __getattr__(self, *args, **kwargs):
            raise self.exception
 
    sys.modules["GaudiPython"] = FakeModule(
        RuntimeError("GaudiPython cannot be used in option files")
    )
 
    # when the special env GAUDI_TEMP_OPTS_FILE is set, it overrides any
    # option(file) on the command line
    if "GAUDI_TEMP_OPTS_FILE" in os.environ:
        options = ["process({!r})".format(os.environ["GAUDI_TEMP_OPTS_FILE"])]
        PrintOff(100)
 
    # "execute" the configuration script generated (if any)
    if options:
        g = {"process": process}
        l = {}
        exec("from Gaudi.Configuration import *", g, l)
        for o in options:
            logging.debug(o)
            exec(o, g, l)
 
    import GaudiKernel.Proxy.Configurable
 
    if opts.no_conf_user_apply:
        logging.info("Disabling automatic apply of ConfigurableUser")
        # pretend that they have been already applied
        GaudiKernel.Proxy.Configurable._appliedConfigurableUsers_ = True
 
    # This need to be done before dumping
    if opts.old_conf_user_apply:
        from GaudiKernel.Proxy.Configurable import (
            applyConfigurableUsers_old as applyConfigurableUsers,
        )
    else:
        from GaudiKernel.Proxy.Configurable import applyConfigurableUsers
    applyConfigurableUsers()
 
    # Options to be processed after applyConfigurableUsers
    if opts.post_options:
        g = {"process": process}
        l = {}
        exec("from Gaudi.Configuration import *", g, l)
        for o in opts.post_options:
            logging.debug(o)
            exec(o, g, l)
 
    if "GAUDI_TEMP_OPTS_FILE" in os.environ:
        os.remove(os.environ["GAUDI_TEMP_OPTS_FILE"])
        opts.use_temp_opts = False
 
    # make configurations available to getAllOpts
    # FIXME the whole machinery has to be inverted, to avoid relying on globals
    from GaudiConfig2 import Configurable, mergeConfigs
 
    Configurable.instances = mergeConfigs(Configurable.instances, process.config)
 
    if opts.verbose and not opts.use_temp_opts:
        c.printconfig(opts.old_opts, opts.all_opts)
    if opts.output:
        c.writeconfig(opts.output, opts.all_opts)
 
    if opts.use_temp_opts:
        fd, tmpfile = mkstemp(".opts")
        os.close(fd)
        c.writeconfig(tmpfile, opts.all_opts)
        os.environ["GAUDI_TEMP_OPTS_FILE"] = tmpfile
        logging.info("Restarting from pre-parsed options")
        os.execv(sys.executable, [sys.executable] + sys.argv)
 
    c.printsequence = opts.printsequence
    if opts.printsequence:
        if opts.ncpus:
            logging.warning("--printsequence not supported with --ncpus: ignored")
        elif opts.dry_run:
            logging.warning("--printsequence not supported with --dry-run: ignored")
 
    c.application = opts.application
 
    # re-enable the GaudiPython module
    del sys.modules["GaudiPython"]
 
    if not opts.dry_run:
        # Do the real processing
        retcode = c.run(opts.gdb, opts.ncpus)
 
        # Now saving the run information pid, retcode and executable path to
        # a file is requested
        if opts.run_info_file:
            import json
            import os
 
            run_info = {}
            run_info["pid"] = os.getpid()
            run_info["retcode"] = retcode
            if os.path.exists("/proc/self/exe"):
                # These options can be used only on unix platforms
                run_info["exe"] = os.readlink("/proc/self/exe")
 
            logging.info("Saving run info to: %s" % opts.run_info_file)
            with open(opts.run_info_file, "w") as f:
                json.dump(run_info, f)
 
        sys.exit(retcode)